Package: speakeasyR 0.1.3
speakeasyR: Fast and Robust Multi-Scale Graph Clustering
A graph community detection algorithm that aims to be performant on large graphs and robust, returning consistent results across runs. SpeakEasy 2 (SE2), the underlying algorithm, is described in Chris Gaiteri, David R. Connell & Faraz A. Sultan et al. (2023) <doi:10.1186/s13059-023-03062-0>. The core algorithm is written in 'C', providing speed and keeping the memory requirements low. This implementation can take advantage of multiple computing cores without increasing memory usage. SE2 can detect community structure across scales, making it a good choice for biological data, which often has hierarchical structure. Graphs can be passed to the algorithm as adjacency matrices using base 'R' matrices, the 'Matrix' library, 'igraph' graphs, or any data that can be coerced into a matrix.
Authors:
speakeasyR_0.1.3.tar.gz
speakeasyR_0.1.3.zip(r-4.5)speakeasyR_0.1.3.zip(r-4.4)speakeasyR_0.1.3.zip(r-4.3)
speakeasyR_0.1.3.tgz(r-4.4-x86_64)speakeasyR_0.1.3.tgz(r-4.4-arm64)speakeasyR_0.1.3.tgz(r-4.3-x86_64)speakeasyR_0.1.3.tgz(r-4.3-arm64)
speakeasyR_0.1.3.tar.gz(r-4.5-noble)speakeasyR_0.1.3.tar.gz(r-4.4-noble)
speakeasyR_0.1.3.tgz(r-4.4-emscripten)speakeasyR_0.1.3.tgz(r-4.3-emscripten)
speakeasyR.pdf |speakeasyR.html✨
speakeasyR/json (API)
NEWS
# Install 'speakeasyR' in R: |
install.packages('speakeasyR', repos = c('https://speakeasy-2.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/speakeasy-2/speakeasyr/issues
Last updated 30 days agofrom:79faabcef4. Checks:OK: 2 NOTE: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 19 2024 |
R-4.5-win-x86_64 | NOTE | Aug 19 2024 |
R-4.5-linux-x86_64 | OK | Aug 19 2024 |
R-4.4-win-x86_64 | NOTE | Aug 19 2024 |
R-4.4-mac-x86_64 | NOTE | Aug 19 2024 |
R-4.4-mac-aarch64 | NOTE | Aug 19 2024 |
R-4.3-win-x86_64 | NOTE | Aug 19 2024 |
R-4.3-mac-x86_64 | NOTE | Aug 19 2024 |
R-4.3-mac-aarch64 | NOTE | Aug 19 2024 |
Exports:clusterknn_graphorder_nodes
Readme and manuals
Help Manual
Help page | Topics |
---|---|
SpeakEasy 2 community detection | cluster |
K-nearest neighbors graph | knn_graph |
Group nodes by community | order_nodes |